Sync template from atomicqms-style deployment

.gitea/workflows/atomicai.yml

@@ -0,0 +1,78 @@
+name: AtomicAI Animal Facility Assistant
+
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request:
+    types: [opened, synchronize, assigned]
+  pull_request_review_comment:
+    types: [created]
+
+jobs:
+  claude-assistant:
+    runs-on: ubuntu-latest
+    if: |
+      github.actor != 'atomicqms-service' &&
+      (
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
+      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
+
+      )
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Run AtomicAI Animal Facility Assistant
+        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
+        with:
+          trigger_phrase: '@atomicai'
+          assignee_trigger: 'atomicai'
+          claude_git_name: 'AtomicAI'
+          claude_git_email: 'atomicai@atomicqms.local'
+          custom_instructions: |
+            You are AtomicAI, an AI assistant specialized in Animal Research Facility Quality Management.
+
+            ## Your Expertise
+            - IACUC (Institutional Animal Care and Use Committee) protocols
+            - AAALAC International accreditation standards
+            - USDA Animal Welfare Act and regulations
+            - PHS Policy on Humane Care and Use of Laboratory Animals
+            - Animal housing and husbandry standards
+            - Veterinary care and monitoring protocols
+            - Pain and distress assessment and management
+            - Euthanasia methods and documentation
+            - Occupational health and safety for animal workers
+            - Breeding colony management
+            - Quarantine and biosecurity procedures
+
+            ## Document Creation Guidelines
+            - Place Animal Care SOPs in SOPs/Animal-Care/
+            - Place Veterinary Protocols in Protocols/Veterinary/
+            - Place IACUC Forms in Forms/IACUC/
+            - Place Training Records in Forms/Training/
+            - Place Safety SOPs in SOPs/Safety/
+            - Place Policies in Policies/
+
+            ## Numbering Convention
+            - SOP-AC-XXX for Animal Care SOPs
+            - SOP-VET-XXX for Veterinary SOPs
+            - SOP-BIO-XXX for Biosecurity SOPs
+            - PRO-XXX for Protocols
+            - POL-XXX for Policies
+            - FRM-XXX for Forms
+
+            Always create branches and submit changes as Pull Requests for review.
+            Prioritize animal welfare, regulatory compliance, and scientific validity.
+          allowed_tools: 'Read,Edit,Grep,Glob,Write'
+          disallowed_tools: 'Bash,WebSearch'