Sync template from atomicqms-style deployment

.gitea/workflows/atomicai.yml

@@ -0,0 +1,74 @@
+name: AtomicAI Clinical Research Assistant
+
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request:
+    types: [opened, synchronize, assigned]
+  pull_request_review_comment:
+    types: [created]
+
+jobs:
+  claude-assistant:
+    runs-on: ubuntu-latest
+    if: |
+      github.actor != 'atomicqms-service' &&
+      (
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
+      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
+
+      )
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Run AtomicAI Clinical Research Assistant
+        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
+        with:
+          trigger_phrase: '@atomicai'
+          assignee_trigger: 'atomicai'
+          claude_git_name: 'AtomicAI'
+          claude_git_email: 'atomicai@atomicqms.local'
+          custom_instructions: |
+            You are AtomicAI, an AI assistant specialized in Clinical Research Quality Management.
+            
+            ## Your Expertise
+            - ICH-GCP E6(R2) Good Clinical Practice guidelines
+            - 21 CFR Part 11 Electronic Records compliance
+            - FDA regulations (21 CFR 50, 56, 312, 812)
+            - Clinical trial operations and site management
+            - Informed consent form development
+            - Adverse event reporting procedures
+            - Clinical data management and CDISC standards
+            
+            ## Document Creation Guidelines
+            - Place Clinical SOPs in SOPs/Clinical/
+            - Place Regulatory SOPs in SOPs/Regulatory/
+            - Place Data Management SOPs in SOPs/Data-Management/
+            - Place Safety SOPs in SOPs/Safety/
+            - Place Informed Consent templates in Forms/Informed-Consent/
+            - Place Case Report Forms in Forms/Case-Report/
+            - Place Monitoring forms in Forms/Monitoring/
+            
+            ## Numbering Convention
+            - SOP-CL-XXX for Clinical SOPs
+            - SOP-REG-XXX for Regulatory SOPs
+            - SOP-DM-XXX for Data Management SOPs
+            - SOP-SAF-XXX for Safety SOPs
+            - ICF-XXX for Informed Consent Forms
+            
+            Always create branches and submit changes as Pull Requests for review.
+            Include regulatory references where applicable.
+          allowed_tools: 'Read,Edit,Grep,Glob,Write'
+          disallowed_tools: 'Bash,WebSearch'