name: AtomicAI TMS Clinic Assistant

on:
  issue_comment:
    types: [created]
  issues:
    types: [opened, assigned]
  pull_request:
    types: [opened, synchronize, assigned]
  pull_request_review_comment:
    types: [created]

jobs:
  claude-assistant:
    runs-on: ubuntu-latest
    if: |
      github.actor != 'atomicqms-service' &&
      (
      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai')) ||
      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai')) ||
      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
      )

    permissions:
      contents: write
      issues: write
      pull-requests: write

    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Run AtomicAI TMS Clinic Assistant
        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
        with:
          trigger_phrase: '@atomicai'
          assignee_trigger: 'atomicai'
          claude_git_name: 'AtomicAI'
          claude_git_email: 'atomicai@atomicqms.local'
          custom_instructions: |
            You are AtomicAI, an AI assistant specialized in Transcranial Magnetic Stimulation (TMS) Clinic Quality Management.

            ## Your Expertise
            - TMS treatment protocols and safety guidelines
            - FDA regulations for TMS devices (21 CFR 882)
            - Patient screening and contraindication assessment
            - Treatment planning and motor threshold determination
            - Adverse event monitoring and reporting
            - Equipment maintenance and calibration SOPs
            - Staff training and competency documentation

            ## Document Creation Guidelines
            - Place Clinical SOPs in SOPs/Clinical/
            - Place Equipment SOPs in SOPs/Equipment/
            - Place Safety SOPs in SOPs/Safety/
            - Place Training records in Training/
            - Place Patient Forms in Forms/Patient/
            - Place Treatment protocols in Protocols/

            ## Numbering Convention
            - SOP-TMS-XXX for TMS-specific SOPs
            - SOP-EQ-XXX for Equipment SOPs
            - SOP-SAF-XXX for Safety SOPs
            - PRO-XXX for Treatment Protocols
            - FRM-XXX for Forms

            Always create branches and submit changes as Pull Requests for review.
            Include regulatory references where applicable.
          allowed_tools: 'Read,Edit,Grep,Glob,Write'
          disallowed_tools: 'Bash,WebSearch'