Sync template from atomicqms-style deployment

.gitea/workflows/atomicai.yml

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+name: AtomicAI Tutorial Assistant
+
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request:
+    types: [opened, synchronize, assigned]
+  pull_request_review_comment:
+    types: [created]
+
+jobs:
+  claude-assistant:
+    runs-on: ubuntu-latest
+    if: |
+      github.actor != 'atomicqms-service' &&
+      (
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
+      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
+
+      )
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Run AtomicAI Tutorial Assistant
+        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
+        with:
+          trigger_phrase: '@atomicai'
+          assignee_trigger: 'atomicai'
+          claude_git_name: 'AtomicAI'
+          claude_git_email: 'atomicai@atomicqms.local'
+          custom_instructions: |
+            You are AtomicAI, a friendly tutorial assistant helping users learn AtomicQMS.
+            
+            ## Your Role
+            This is a TUTORIAL repository. Be extra helpful and educational:
+            - Explain concepts as you work
+            - Point out best practices
+            - Suggest next learning steps
+            - Be encouraging and patient
+            
+            ## Document Guidelines
+            - Place SOPs in SOPs/
+            - Place Forms in Forms/
+            - Place Policies in Policies/
+            - Place Work Instructions in Work-Instructions/
+            - Reference examples in Examples/ when helpful
+            - Use templates from Templates/ as starting points
+            
+            ## Numbering Convention
+            - POL-XXX for Policies
+            - SOP-XXX for Standard Operating Procedures
+            - WI-XXX for Work Instructions
+            - FRM-XXX for Forms
+            
+            When creating documents, always:
+            1. Create a branch
+            2. Submit as Pull Request
+            3. Explain what you did and why
+            
+            Remind users this is a sandbox - they can experiment freely!
+          allowed_tools: 'Read,Edit,Grep,Glob,Write'
+          disallowed_tools: 'Bash,WebSearch'

Examples/SOP-001-Document-Control.md

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+# SOP-001: Document Control Procedure
+
+## Document Information
+
+| Field | Value |
+|-------|-------|
+| **Document ID** | SOP-001 |
+| **Version** | 1.0 |
+| **Effective Date** | 2024-01-15 |
+| **Review Date** | 2025-01-15 |
+| **Author** | Quality Manager |
+| **Approved By** | Director of Quality |
+
+## 1. Purpose
+
+This Standard Operating Procedure establishes the process for creating, reviewing, approving, and managing quality management system documents.
+
+## 2. Scope
+
+This procedure applies to all controlled documents within the Quality Management System, including:
+- Policies
+- Standard Operating Procedures (SOPs)
+- Work Instructions
+- Forms and Templates
+
+## 3. Responsibilities
+
+### 3.1 Document Author
+- Draft new documents or revisions
+- Submit documents for review via Pull Request
+- Address reviewer feedback
+
+### 3.2 Document Reviewer
+- Review documents for accuracy and completeness
+- Provide feedback within 5 business days
+- Approve or request changes
+
+### 3.3 Quality Manager
+- Maintain document numbering system
+- Ensure documents are properly archived
+- Coordinate annual document reviews
+
+## 4. Procedure
+
+### 4.1 Creating a New Document
+
+1. Create a new branch from `main`
+2. Use the appropriate template from `/Templates`
+3. Assign a document number following the convention:
+   - POL-XXX for Policies
+   - SOP-XXX for Standard Operating Procedures
+   - WI-XXX for Work Instructions
+   - FRM-XXX for Forms
+4. Complete all required sections
+5. Submit a Pull Request for review
+
+### 4.2 Document Review Process
+
+1. Assign at least one reviewer to the Pull Request
+2. Reviewers have 5 business days to complete review
+3. Address all feedback before merging
+4. Obtain required approvals
+5. Merge to `main` branch
+
+### 4.3 Document Revision
+
+1. Create a new branch from `main`
+2. Update the version number
+3. Document changes in the Revision History section
+4. Follow the standard review process
+
+## 5. Document Numbering
+
+| Type | Format | Example |
+|------|--------|---------|
+| Policy | POL-XXX | POL-001 |
+| SOP | SOP-XXX | SOP-001 |
+| Work Instruction | WI-XXX | WI-001 |
+| Form | FRM-XXX | FRM-001 |
+
+## 6. Revision History
+
+| Version | Date | Author | Changes |
+|---------|------|--------|---------|
+| 1.0 | 2024-01-15 | Quality Manager | Initial release |
+
+---
+
+*This is an example SOP for training purposes. Customize for your organization's needs.*

README.md

@@ -1,3 +1,97 @@
-# getting-started
+# Welcome to AtomicQMS! 🚀
 
-This interactive tutorial will teach you how to use AtomicQMS and your AI assistant, **AtomicAI**.
+This interactive tutorial will teach you how to use AtomicQMS and your AI assistant, **AtomicAI**.
+
+## What You'll Learn
+
+1. **Understanding the QMS structure** - How documents are organized
+2. **Using AtomicAI** - Your AI-powered documentation assistant
+3. **Creating your first SOP** - Step-by-step document creation
+4. **Review workflows** - Using Pull Requests for document control
+5. **Next steps** - Choosing the right template for your needs
+
+## How This Tutorial Works
+
+This repository is your **personal sandbox**. You can:
+- Create issues and mention `@atomicai` to get help
+- Create documents and learn the workflow
+- Make mistakes freely - this is for learning!
+
+When you're ready for production, create a new repository from one of our specialized templates.
+
+---
+
+## Tutorial Steps
+
+### Step 1: Meet AtomicAI
+
+AtomicAI is your AI documentation assistant. Try it now:
+
+1. Go to the **Issues** tab
+2. Click **New Issue**
+3. Title it "My first question"
+4. In the body, type: `@atomicai What can you help me with?`
+5. Submit the issue and watch AtomicAI respond!
+
+### Step 2: Understand the Structure
+
+Look at the folders in this repository:
+
+```
+├── SOPs/              # Standard Operating Procedures
+├── Forms/             # Fillable forms and checklists
+├── Policies/          # High-level policies
+├── Work-Instructions/ # Detailed step-by-step guides
+├── Templates/         # Document templates
+└── Examples/          # Sample documents to learn from
+```
+
+### Step 3: Create Your First SOP
+
+1. Create a new issue
+2. Title: "Create SOP for [your topic]"
+3. Body: `@atomicai Please create an SOP for [describe what you need]`
+
+AtomicAI will:
+- Create a new branch
+- Write the SOP following best practices
+- Submit a Pull Request for your review
+
+### Step 4: Review and Approve
+
+When AtomicAI creates a Pull Request:
+1. Review the changes in the **Files changed** tab
+2. Add comments if you want changes
+3. Approve and merge when satisfied
+
+This is **document control** - every change is tracked and reviewed!
+
+### Step 5: Explore the Examples
+
+Check out the `Examples/` folder for sample documents:
+- A completed SOP
+- A filled-out form
+- Common QMS patterns
+
+---
+
+## Ready for Production?
+
+When you've completed this tutorial, choose a specialized template:
+
+| Template | Best For |
+|----------|----------|
+| [QMS Template](../qms-template) | General quality management |
+| [Clinical Research](../clinical-research-template) | Clinical trials, ICH-GCP |
+| [Laboratory Science](../laboratory-science-template) | Research labs, GLP |
+| [Pharmacy](../pharmacy-template) | Retail/hospital pharmacy, USP |
+
+---
+
+## Need Help?
+
+- Create an issue and mention `@atomicai`
+- Check the examples in this repository
+- Review the [AtomicQMS Documentation](#) (coming soon)
+
+Happy documenting! 📋

Templates/SOP-Template.md

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+# SOP-XXX: [Title]
+
+## Document Information
+
+| Field | Value |
+|-------|-------|
+| **Document ID** | SOP-XXX |
+| **Version** | 1.0 |
+| **Effective Date** | [Date] |
+| **Review Date** | [Date + 1 year] |
+| **Author** | [Name] |
+| **Approved By** | [Name] |
+
+## 1. Purpose
+
+[Describe the purpose of this procedure]
+
+## 2. Scope
+
+[Define what this procedure covers and any limitations]
+
+## 3. Responsibilities
+
+### 3.1 [Role 1]
+- [Responsibility]
+- [Responsibility]
+
+### 3.2 [Role 2]
+- [Responsibility]
+- [Responsibility]
+
+## 4. Definitions
+
+| Term | Definition |
+|------|------------|
+| [Term] | [Definition] |
+
+## 5. Procedure
+
+### 5.1 [Step Category]
+
+1. [Step]
+2. [Step]
+3. [Step]
+
+### 5.2 [Step Category]
+
+1. [Step]
+2. [Step]
+3. [Step]
+
+## 6. References
+
+- [Reference 1]
+- [Reference 2]
+
+## 7. Revision History
+
+| Version | Date | Author | Changes |
+|---------|------|--------|---------|
+| 1.0 | [Date] | [Name] | Initial release |