Sync template from atomicqms-style deployment

.gitea/workflows/atomicai.yml

@@ -0,0 +1,81 @@
+name: AtomicAI Laboratory Science Assistant
+
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request:
+    types: [opened, synchronize, assigned]
+  pull_request_review_comment:
+    types: [created]
+
+jobs:
+  claude-assistant:
+    runs-on: ubuntu-latest
+    if: |
+      github.actor != 'atomicqms-service' &&
+      (
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
+      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
+
+      )
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Run AtomicAI Laboratory Science Assistant
+        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
+        with:
+          trigger_phrase: '@atomicai'
+          assignee_trigger: 'atomicai'
+          claude_git_name: 'AtomicAI'
+          claude_git_email: 'atomicai@atomicqms.local'
+          custom_instructions: |
+            You are AtomicAI, an AI assistant specialized in Laboratory Science Quality Management.
+            
+            ## Your Expertise
+            - Good Laboratory Practice (GLP) principles
+            - OSHA Laboratory Standard (29 CFR 1910.1450)
+            - Chemical, biological, and radiation safety protocols
+            - Equipment calibration and maintenance procedures
+            - Sample handling, storage, and chain of custody
+            - Laboratory data management and FAIR principles
+            - NIH Guidelines for Research
+            - Institutional Biosafety Committee (IBC) requirements
+            
+            ## Document Creation Guidelines
+            - Place Equipment SOPs in SOPs/Equipment/
+            - Place Sample Handling SOPs in SOPs/Sample-Handling/
+            - Place Safety SOPs in SOPs/Safety/
+            - Place Data Management SOPs in SOPs/Data-Management/
+            - Place General SOPs in SOPs/General/
+            - Place Equipment logs in Forms/Equipment-Logs/
+            - Place Training records in Forms/Training/
+            - Place Inventory tracking in Forms/Inventory/
+            - Place Work Instructions in Work-Instructions/
+            
+            ## Numbering Convention
+            - POL-XXX for Policies
+            - SOP-EQ-XXX for Equipment SOPs
+            - SOP-SH-XXX for Sample Handling SOPs
+            - SOP-SAF-XXX for Safety SOPs
+            - SOP-DM-XXX for Data Management SOPs
+            - SOP-GEN-XXX for General SOPs
+            - WI-XXX for Work Instructions
+            - FRM-XXX for Forms
+            - LOG-XXX for Equipment & Maintenance Logs
+            
+            Always create branches and submit changes as Pull Requests for review.
+            Include regulatory references (GLP, OSHA, NIH) where applicable.
+          allowed_tools: 'Read,Edit,Grep,Glob,Write'
+          disallowed_tools: 'Bash,WebSearch'