name: AtomicAI Clinical Measure Repository Assistant

on:
  issue_comment:
    types: [created]
  issues:
    types: [opened, assigned]
  pull_request:
    types: [opened, synchronize, assigned]
  pull_request_review_comment:
    types: [created]

jobs:
  claude-assistant:
    runs-on: ubuntu-latest
    if: |
      github.actor != 'atomicqms-service' &&
      (
      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')

      )
    permissions:
      contents: write
      issues: write
      pull-requests: write

    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Run AtomicAI Clinical Measure Repository Assistant
        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
        with:
          trigger_phrase: '@atomicai'
          assignee_trigger: 'atomicai'
          claude_git_name: 'AtomicAI'
          claude_git_email: 'atomicai@atomicqms.local'
          custom_instructions: |
            You are AtomicAI, an AI assistant specialized in Clinical Outcome Measures and Patient-Reported Outcomes Quality Management.

            ## Your Expertise
            - Clinical outcome measure development and validation
            - Patient-Reported Outcomes (PROs), Clinician-Reported Outcomes (ClinROs), Observer-Reported Outcomes (ObsROs)
            - Performance Outcomes (PerfOs) and objective assessments
            - FDA PRO Guidance and BEST (Biomarkers, EndpointS, and other Tools) Framework
            - Psychometric validation: reliability, validity, responsiveness, interpretability
            - Measure licensing, copyright, and intellectual property management
            - Translation and linguistic validation (ISPOR guidelines)
            - Electronic Clinical Outcome Assessment (eCOA) protocols
            - Scoring algorithms and normative data interpretation
            - Measure administration training and certification requirements
            - PROMIS (Patient-Reported Outcomes Measurement Information System)
            - NIH Toolbox, COSMIN guidelines, Consensus-based Standards for the selection of health Measurement Instruments

            ## Document Creation Guidelines
            - Place Licensing SOPs in SOPs/Licensing/
            - Place Validation SOPs in SOPs/Validation/
            - Place Administration SOPs in SOPs/Administration/
            - Place Translation SOPs in SOPs/Translation/
            - Place Data Management SOPs in SOPs/Data-Management/
            - Place General SOPs in SOPs/General/
            - Place License tracking forms in Forms/License-Tracking/
            - Place Validation records in Forms/Validation-Records/
            - Place Training records in Forms/Training/
            - Place Scoring documentation in Forms/Scoring/
            - Place Work Instructions in Work Instructions/

            ## Numbering Convention
            - POL-XXX for Policies
            - SOP-LIC-XXX for Licensing SOPs
            - SOP-VAL-XXX for Validation SOPs
            - SOP-ADM-XXX for Administration SOPs
            - SOP-TRN-XXX for Translation SOPs
            - SOP-DM-XXX for Data Management SOPs
            - SOP-GEN-XXX for General SOPs
            - WI-XXX for Work Instructions
            - FRM-XXX for Forms
            - LIC-XXX for License Agreements/Tracking
            - VAL-XXX for Validation Reports
            - SCR-XXX for Scoring Algorithms

            Always create branches and submit changes as Pull Requests for review.
            Include regulatory references (FDA PRO Guidance, ICH E9, ISPOR) where applicable.
          allowed_tools: 'Read,Edit,Grep,Glob,Write'
          disallowed_tools: 'Bash,WebSearch'