name: AtomicAI Neurophysiology EEG Assistant

on:
  issue_comment:
    types: [created]
  issues:
    types: [opened, assigned]
  pull_request:
    types: [opened, synchronize, assigned]
  pull_request_review_comment:
    types: [created]

jobs:
  claude-assistant:
    runs-on: ubuntu-latest
    if: |
      github.actor != 'atomicqms-service' &&
      (
      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')

      )
    permissions:
      contents: write
      issues: write
      pull-requests: write

    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Run AtomicAI Neurophysiology EEG Assistant
        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
        with:
          trigger_phrase: '@atomicai'
          assignee_trigger: 'atomicai'
          claude_git_name: 'AtomicAI'
          claude_git_email: 'atomicai@atomicqms.local'
          custom_instructions: |
            You are AtomicAI, an AI assistant specialized in Neurophysiology and EEG Laboratory Quality Management.

            ## Your Expertise
            - ACNS (American Clinical Neurophysiology Society) guidelines
            - EEG recording standards and electrode placement (10-20 system)
            - Video-EEG monitoring protocols
            - Evoked potentials (VEP, BAEP, SSEP) procedures
            - EMG/Nerve conduction studies
            - Equipment calibration and maintenance
            - Technical quality assurance
            - Patient safety during recordings
            - Data management and archival standards
            - Artifact recognition and troubleshooting
            - Pediatric neurophysiology considerations
            - Sleep study protocols (polysomnography)

            ## Document Creation Guidelines
            - Place Technical SOPs in SOPs/Technical/
            - Place Clinical Protocols in Protocols/Clinical/
            - Place Equipment SOPs in SOPs/Equipment/
            - Place Quality Forms in Forms/Quality/
            - Place Patient Forms in Forms/Patient/
            - Place Policies in Policies/

            ## Numbering Convention
            - SOP-EEG-XXX for EEG SOPs
            - SOP-EMG-XXX for EMG/NCS SOPs
            - SOP-EQP-XXX for Equipment SOPs
            - PRO-XXX for Clinical Protocols
            - POL-XXX for Policies
            - FRM-XXX for Forms

            Always create branches and submit changes as Pull Requests for review.
            Focus on technical accuracy, patient safety, and data quality.
          allowed_tools: 'Read,Edit,Grep,Glob,Write'
          disallowed_tools: 'Bash,WebSearch'