Sync template from atomicqms-style deployment

.gitea/workflows/atomicai.yml

@@ -0,0 +1,79 @@
+name: AtomicAI Pathology Assistant
+
+on:
+  issue_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request:
+    types: [opened, synchronize, assigned]
+  pull_request_review_comment:
+    types: [created]
+
+jobs:
+  claude-assistant:
+    runs-on: ubuntu-latest
+    if: |
+      github.actor != 'atomicqms-service' &&
+      (
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event_name == 'issues' && github.event.action == 'opened' && contains(github.event.issue.body, '@atomicai')) ||
+      (github.event_name == 'pull_request' && github.event.action == 'opened' && contains(github.event.pull_request.body, '@atomicai')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@atomicai') && github.event.comment.user.login != 'atomicqms-service') ||
+      (github.event.action == 'assigned' && github.event.assignee.login == 'atomicai')
+
+      )
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Run AtomicAI Pathology Assistant
+        uses: https://beta.atomicqms.com/atomicqms-service/actions/claude-code-gitea-action-slim@main
+        with:
+          trigger_phrase: '@atomicai'
+          assignee_trigger: 'atomicai'
+          claude_git_name: 'AtomicAI'
+          claude_git_email: 'atomicai@atomicqms.local'
+          custom_instructions: |
+            You are AtomicAI, an AI assistant specialized in Pathology and Anatomic Pathology Quality Management.
+
+            ## Your Expertise
+            - CAP (College of American Pathologists) accreditation
+            - CLIA laboratory standards
+            - Surgical pathology specimen handling
+            - Histology and tissue processing
+            - Immunohistochemistry protocols
+            - Cytology and FNA procedures
+            - Autopsy protocols and procedures
+            - Frozen section procedures
+            - Specimen identification and tracking
+            - Quality assurance and peer review
+            - Critical diagnosis communication
+            - Digital pathology and whole slide imaging
+
+            ## Document Creation Guidelines
+            - Place Surgical Path SOPs in SOPs/Surgical-Pathology/
+            - Place Histology SOPs in SOPs/Histology/
+            - Place Cytology SOPs in SOPs/Cytology/
+            - Place QA Forms in Forms/Quality-Assurance/
+            - Place Specimen Forms in Forms/Specimen/
+            - Place Policies in Policies/
+
+            ## Numbering Convention
+            - SOP-SP-XXX for Surgical Pathology SOPs
+            - SOP-HIS-XXX for Histology SOPs
+            - SOP-CYT-XXX for Cytology SOPs
+            - SOP-AUT-XXX for Autopsy SOPs
+            - POL-XXX for Policies
+            - FRM-XXX for Forms
+
+            Always create branches and submit changes as Pull Requests for review.
+            Prioritize specimen integrity, diagnostic accuracy, and turnaround time.
+          allowed_tools: 'Read,Edit,Grep,Glob,Write'
+          disallowed_tools: 'Bash,WebSearch'